Nutrient Malabsorption: What It Is and What to Do About It

By Nikki Lyn Pugh

Reading Time: 8 minutes

This article discusses emerging/ongoing science and research. It is intended for general informational purposes only. This content is unrelated to products offered by Organixx and does not contain any representations about the performance of such products.

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It doesn’t matter how many supplements you take or how many pounds of green veggies you consume… if your digestive and other nutrient input mechanisms are off-balance, your body will not be able to take advantage of all the “good stuff” you’re putting into it. Nutrient malabsorption can lead to serious issues for an individual. It is also a foundational disease-causing problem that has reached epidemic proportions around the world.

3 Primary Ways Malabsorption Occurs

Maintaining health by providing the body with all that it needs is a delicate dance. As you can probably imagine, malabsorption adds another level of complication to an already intricate choreography that eventually ends in some form of malnutrition. More often than not, disease conditions occur due to malabsorption of nutrients over decades.

In a nutshell, malabsorption is a situation where, for whatever reason, the body cannot break down and absorb certain proteins, fats, vitamins, nutrients, minerals, and enzymes in foods (and subsequently in any supplements) that a person may be taking.

So, what causes malabsorption in the first place? The following are just a few possible reasons.

#1. Gut Imbalance

Ultimately all other malabsorption triggers (which we will get to in a minute) come down to what woman clutching stomachhappens in the gut. This is because the digestive tract is the “first stop” for a nutrient breakdown.

According to the Merck Manual [1], digestion and absorption occur in three phases. First, bile salts help food break down in the intestinal tract. Secondly, certain enzymes begin to digest (i.e., break down), microscopic food particles even further into substances cells can absorb for nutrition. Lastly, the lymph fluid transports these nutrients where they need to go.

When phase one of this process goes awry, this is sometimes called maldigestion. When any part of the second or third phase of this process is hindered, this is technically called malabsorption.

Anything that contributes to an imbalance of gut flora can lend itself to malabsorption issues too. Typical stress and diet-related conditions can result in malabsorption. These include:

  • irritable bowel syndrome (IBS)
  • acid reflux
  • diverticulitis [2]
  • small intestinal bacterial overgrowth syndrome (SIBO) [3]
  • leaky gut (intestinal permeability)
  • gut dysbiosis (lack of diverse gut flora) [4]

Specific GI-related traumas such as radiation therapy for cancer, intestinal infection, lactose or gluten intolerance, parasite infestation, taking certain kinds of drugs such as tetracycline, colchicine, or cholestyramine, or taking too many antibiotics [5] can also contribute to this condition.

On the other hand, malabsorption of certain substances can result in some of the conditions mentioned above. For example, IBS can be caused by malabsorption of fructose in the GI tract [6].

#2. Methylation Issues

A little-known cause of nutrient malabsorption can malfunction in methylation. Methylation is the process by which chemical compounds are converted into other needed substances. For example, methylation helps convert serotonin into melatonin and aggressive estrogens into less aggressive ones.

Even though methylation is a fairly complicated chemical process, it is also a very ordinary one; it happens in your body every single day. And when it isn’t functioning properly, malabsorption of nutrients is one of the unfortunate results.

There are many reasons why an individual may have poor methylation. A big one is a particular genetic condition commonly referred to as the MTHFR gene mutation. The MTHFR gene impacts how well your body metabolizes the enzyme methylenetetrahydrofolate reductase or MTHFR. This may sound like a rather obscure term, but without it, the body cannot then metabolize many common substances.

Metabolization of protein and certain kinds of vitamins and minerals, including folate which is required for cell division, can be affected. The MTHFR gene mutation can also lead to other complications in digestion, hormone balancing, and immune function.
mother holding child

The MTHFR gene mutation may be more widespread than previously thought. It is estimated that between 30% and 60% of all individuals worldwide may carry the MTHFR gene mutation, which is passed down from parent to child [7].

Some individuals will have the mutation but not express any of its complicated symptoms. On the other hand, between 14% to 20% of the population may have a more severe form of it which can impact health more severely. You can find out if you have the MTHFR gene mutation through a simple genetic test.

#3. Specific Disease Conditions

Finally, there are some disease conditions that also have a malabsorption component, some of which are not necessarily related to the GI tract initially:

  • Digestive diseases such as celiac disease, Crohn’s disease, tropical sprue, or whipple disease
  • Cystic fibrosis
  • Diseases of the liver, such as cirrhosis
  • Conditions of the gallbladder or pancreas
  • Scleroderma, or any disease related to collagen production
  • Hyper- or hypothyroidism
  • Addison’s disease, which affects the adrenals
  • Skin diseases which lead to rapid cell turnover
  • Eating disorders

Common Symptoms of Malabsorption

According to the International Foundation for Functional Gastrointestinal Disorders [8], there are many general signs that you may have nutrient malabsorption. These include:hand reaching for toilet paper

Also, some immediate and noticeable symptoms of malabsorption can also be connected to the lack of specific nutrients:

  • Anemia, which is connected to malabsorption of iron or essential B vitamins
  • Bruising or bleeding easily, tied to malabsorption of vitamins K and C
  • Carpopedal spasms (i.e., spasms of the hands, feet, ankles, and wrists), connected to Magnesium and Calcium malabsorption
  • Edema, associated with protein malabsorption
  • Night blindness, connected to not absorbing vitamin K properly
  • Peripheral neuropathy, linked to malabsorption of B Vitamins, especially B1 and B12
  • Pain in the joints and bones and easily fractured bones, associated with magnesium, calcium, vitamin K, and vitamin D malabsorption [9]

Keep in mind that the reasons for immediate symptoms of nutrient malabsorption mentioned above are just the tips of the iceberg. Often these reasons and symptoms overlap.

If you suspect malabsorption, you can obtain a clearer picture of your particular situation by speaking with your medical professional. They can inform you about tests available to you to check for malabsorption as well as specific protocols to get you back on track!

7 Steps to Help Prevent Nutrient Malabsorption (or Even Reverse It)

After all that bad news about malabsorption, here is the good news. There is A LOT you can do about it right now! Since malabsorption can be a serious issue, it is always important for you to discuss your particular concerns with your holistic health provider as soon as possible. In the meantime, here are some things you can do right now to improve your nutrient absorption capacity and overall health:

#1 – Eat a gut-healing diet.

You can help restore gut balance by eating a clean, wholesome diet which includes plenty of probiotics like sauerkraut, cultured vegetables, kefir, and probiotic supplements as well as prebiotics such as asparagus and garlic.

Cutting back on dairy if you are lactose intolerant (or just to give your body a break) as well as going gluten-free and stopping excess sugar consumption can all help to reduce digestive inflammation. Many studies to date [10] have made the link between high consumption of sugar and disturbances in gut flora balance.

Also, consuming gut-healing foods such as organic bone broth can help restore your delicate intestinal lining. And don’t skimp on the filtered water! Staying hydrated will support your liver and kidneys, which are also key players in the nutrient breakdown as well as the removal of waste.

#2 – Support methylation.

The dietary changes mentioned above will support your methylation pathways as well, whether or not you have the MTHFR gene mutation. Also, supporting your liver in additional ways and targeted supplementation, especially of B12 and folate, are also good strategies.
woman walking for exercise

#3 – Get Moving.

Did you know that regular exercise can kick-start the production of certain healthy bacteria in your gut? It’s true! Even if it’s just a 15-minute walk, try to move your body every day. Your gut will thank you!

#4 – Reduce stress.

Chronic stress is a major downer for your health on all levels. It can affect your gut health, curtail immune system function, and raise inflammation levels in your body.

Cutting down on stress can help your health across the board, and especially your gut and methylation pathways. Stress-producing events happen to us all. Learning the tools to calm stress responses quickly, such as Tapping [11] or calming breathing techniques, will do you wonders on your way to optimal health.

#5 – Get quality sleep!

When we sleep is the time when the body has a chance to not only rest but to restore as well. When we do not get enough sleep, or our sleep is interrupted and not “quality,” our bodies can suffer.

Dozens of studies have shown that insufficient sleep can lead to accelerated aging, cell damage, and even depression. On the other hand, a 2014 University of Utah investigation [12] found a link between quality restorative sleep and longer telomere length. Telomeres are protective agents at the ends of each chromosome that are connected to aging.

#6 – Try some healing herbs.

Aloe vera, peppermint, fennel, and ginger are some herbs that may help your gut and encourage nutrient absorption. A great practice is to try a healing tea (ginger or fennel are good choices) between meals.

#7. Take Bioavailable supplements.

A regimen of bioavailable supplements will help to ensure the body has ready access to the nutrients that it needs. Keep in mind that many vitamin and mineral supplements on the market today include synthetic ingredients which are not as easy for the body to absorb. These solid tablets can even pass right through the system intact! If you’re going to invest in a supplement for the nutrients, it contains, makes sure it’s in a format your body can use.

Malabsorption is a serious issue that is affecting more and more people – many without them even knowing it. If you suspect malabsorption may be an issue for you, be sure to talk to your health professional before employing any natural healing protocol. Tests are available to find out if you have malabsorption issues, as well as complications with methylation.

In the meantime, putting into place some easy lifestyle and dietary changes, as well as adding simple supplements and self-care techniques that can help you heal and restore will do you wonders in turning your health around and regaining your vital energy!

If you’re not getting all the nutrients and antioxidants you need from food, your best source is whole food vitamins. Organixx Multi-Vita-Maxx contains 21 uniquely fermented vitamins and enzyme-activated minerals that are more “bioavailable” and easily absorbed by your body than the synthetic compounds found in most supplements.

Organixx Multi-Vita-Maxx
Nikki Lyn Pugh
Nikki Lyn Pugh, MFA, INHC is a natural health researcher and writer. She is also an integrative nutritional health coach specializing in autoimmune conditions, chronic stress, and energy medicine. She loves to inspire people to become empowered with their health through education and gentle guidance. Nikki lives and works in Cottonwood, AZ, with her bunny "Mr. Dot."

Article Summary

  • If your digestive and other nutrient input mechanisms are off-balance, your body will not be able to take advantage of all the “good stuff” you’re putting into it.

  • Nutrient malabsorption can lead to serious issues for an individual. It is also a foundational disease-causing problem that has reached epidemic proportions around the world.

  • 3 Primary Ways Malabsorption Occurs

    • Gut Imbalance
    • Methylation Issues
    • Specific Disease Conditions
  • General signs that you may have nutrient malabsorption include:

    • Chronic diarrhea
    • Greasy or light-colored stool
    • Abdominal bloating
    • Gas
    • Sore tongue
    • Dry lips and mouth
    • General fatigue
  • 7 Steps to Help Prevent Nutrient Malabsorption (or Even Reverse It)

    • Eat a gut-healing diet
    • Support methylation
    • Get Moving
    •  Reduce stress
    • Get quality sleep! Try some healing herbs
    •  Take Bioavailable supplements


  1. I also bought the Magic Complex essential oil. I can not find any information on how best to use it. Please advise. Oral, skin, where, inhalation???

    • Hi Becky,

      Thanks for your interest in our Magi-Complexx Essential Oil and for your recent purchase with us.

      We're sorry to hear that you were not provided with the information you were looking for. We'd be more than happy to help you with that.

      Unlike the majority of essential oils on the market, our Magi-Complexx Essential Oil is 100% USDA Certified Organic, and completely safe.

      This blend can be diffused, heated gently as well as inhaled using many more aromatherapy methods. You can also dilute 1 drop in 4oz of water.

      Here is the recommended dosage and use - 1 drop per day (can be added to water or used topically).

      For more details, feel free to check out the product page on our website:

      We hope this helps and wish you a happy & healthy day.

  2. How do I get tested for MTHFR gene? Can my primary care order this or does my functional medicine doctor need to?

    • Hi Becky, thanks for your question.

      This would be something that you would need to discuss with your primary care physician as there is bloodwork that can be done to test for MTHFR.

      We hope this helps and wish you all the best on your health and wellness journey.

  3. Hi Organixx, I am.suffering from the signs mentioned above for malabsorption of nutrients and please help me to choose which type of supplements I need to have and it's dosages

    • Hi Sunil! First of all, we would suggest speaking with a medical professional before starting any new supplements or health regimes to help you determine whether our product would be appropriate for your personal needs, and if so, what serving recommendation would be best suited for you. With this, Organixx offers Liquid Multi-Vita-Maxx, which contains humic and fulvic acid helps your body ABSORB vitamins and nutrients FASTER. Even better, it allows your body to COMPLETELY ABSORB all the vitamins and nutrients you consume – both in your diet AND in the Liquid Multi-Vita-Maxx formula. Please click here to learn more: .

    • Hello Diana. Golden milk (also known as turmeric milk) is a hot Indian drink made with milk and various spices.

  4. I had malabsorption starting with my first pregnancy, tried a lot but nothing seemed to be the right solution. Now I'm using apple cider vinegar/golden milk before meals and for the first time in decades I have clean and healthy nails. (Always had white spots in them) which for me is a sign that my absorption is much beter now.

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